高分辨熔解技术常用荧光染料的SNP基因分型能力比较
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中国博士后科学基金资助项目(20080430239)。


Comparison of common fluorescent dyes for SNP genotyping in HRM technology
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    摘要:

    摘要:目的:评价LC Green、Syto 9和Eva Green 3种高分辨熔解(HRM)染料对单核苷酸多态性(SNP)基因分型的能力。 方法:以肿瘤坏死因子(TNF)基因启动子-857 C>T(rs1799724)位点为例,分别用上述3种荧光染料进行PCR-HRM检测,依据特征熔解曲线进行基因分型并测序验证。基因分型能力评价以野生型与纯合突变型PCR产物Tm值之差(△Tm)来表示。 结果:PCR-HRM检测到4种特征熔解曲线,经测序后发现第4条为双突变杂合,包含863C>A(rs1800630)位点。HRM染料LC Green, Syto 9, EVa Green的基因分型能力分别为(0.52±0.030) ℃、(0.51±0.066) ℃和(0.39±0.152) ℃。其中Syto 9野生型(CC)和突变型(TT)的变异系数(CV)均为0.03%,为3种染料中最低。 结论:3种染料均能用于HRM技术进行SNP基因分型,Syto 9和LC Green分辨率优于Eva Green,其中Syto 9易用性最好、Eva Green性价比最高。

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    Abstract:Objective:To evaluate the capability of three high-resolution melting (HRM) dyes including LC Green, Syto 9 and Eva Green applied in HRM technology for single nucleotide polymorphism (SNP) genotyping. Methods:TNF promoter-857C>T (rs1799724) was selected to evaluate the above three fluorescent dyes and their capabilities for SNP genotyping in HRM analysis were determined on the basis of the differences of Tm value of PCR products between wild type and homozygous mutant type. Results:Four kinds of characteristic HRM curves were observed and the PCR products of the four melting curves were sequenced. The fourth melting curve was verified to be a dual heterozygote which contained another SNP of TNF promoter-863C>A(rs1800630) besides 857C>T. The Tm value of resolution for SNP genotyping by LC Green, Syto 9 and Eva Green dyes were (0.52±0.030) ℃,(0.51±0.066) ℃ and (0.39±0.152) ℃ respectively. In the three HRM dyes, Syto 9 showed the lowest coefficients of variation 0.03% in both wildtype and mutant type. Conclusion:All the three fluorescent dyes can be applied to HRM technology for SNP genotyping. Syto 9 and LC Green are better than Eva Green in detecting resolution while Syto 9 is the best easeofuse dye and Eva Green is the highest costeffective dye.

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尤崇革,李晓军,郜莉娜,李菲菲.高分辨熔解技术常用荧光染料的SNP基因分型能力比较[J].临床检验杂志,2011,29(8):575-577

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  • 收稿日期:2001-04-26
  • 最后修改日期:2011-06-25
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