自组装核酸适配子探针在深部真菌感染可视化检测中的应用
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国家自然科学基金(81601806);邹城市科技发展计划项目(2016-56-89)


Application of self-assembled nucleic acid aptamer probe in visual detection of deep fungal infection
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    摘要:

    摘要:目的:建立一种自组装核酸适配子探针技术以实现深部真菌感染中外周血(1,3)-β-D-葡聚糖的可视化检测。 方法:用碱酶解法提取白念珠菌(1,3)-β-D-葡聚糖并使用葡聚糖酶体外消化处理,获得的水溶性葡聚糖作为靶标,利用指数富集的配体系统进化技术(systematic evolution of ligands by exponential enrichment,SELEX)从单链 DNA文库中筛选能够特异性识别并结合葡聚糖的DNA适配子;对筛选出的适配子进行结构设计,使其能够形成含血晶素(hemin)的G四联体结构,从而具有拟过氧化物酶特性,进一步催化TMB底物显色,肉眼判断颜色变化进行结果判读;对149例临床血清标本分别用建立的方法和G试验检测(1,3)-β-D-葡聚糖,评价检测效能。 结果:成功提取白念珠菌(1,3)-β-D-葡聚糖并使用葡聚糖酶消化处理后经SDS-PAGE分离、糖原染色发现,其水溶性的(1,3)-β-D-葡聚糖主要分布在相对分子质量<1 700、约4 600和10 000~15 000区域。其中相对分子量小于10 000的(1,3)-β-D-葡聚糖比例较高,将其作为适配子筛选靶标。经过8轮正向筛选和4轮负向筛选,将最后一轮ssDNA文库扩增为dsDNA并克隆至pUC19质粒,对单个阳性克隆扩增所得适配子进行相对结合力比较,获得6个结合力较高的适配子(命名为A1—A6)。竞争试验结果表明6个适配子能够识别4个不同位点。将高结合力适配子对不同浓度(1,3)-β-D-葡聚糖进行亲和力检测,肉眼可辨检出限为3.125 pg/mL,线性范围为1.6 pg/mL~400 pg/mL。对149例血清(1,3)-β-D-葡聚糖检测结果显示,适配子自组装显色系统检测性能优于G试验(χ2=4.373,P=0.036 5)。 结论:成功自建可视化核酸适配子探针,实现外周血(1,3)-β-D-葡聚糖检测,且有望开发深部真菌床旁检测试剂盒。

    Abstract:

    Abstract: Objective: To establish a self-assembled nucleic acid aptamer probe technique for the visual detection of peripheral blood (1,3)-β-D-glucans in deep fungal infection. Methods: The (1,3)-β-D-glucans from Candida albicans were extracted by the alkali enzymatic method and digested by glucanase in vitro. The obtained water-soluble (1,3)-β-D-glucans were used as the target, and the single-strained DNA (ssDNA) aptamers which could specifically recognize and bind with glucans were screened from the single-strained DNA library using the systematic evolution of ligands by exponential enrichment (SELEX). The selected aptamers were designed to form the G-quadruplex structure containing hemin, which had the characteristics of peroxidase, and could catalyze the color development of TMB substrate for the color change judged by naked eyes. The (1,3)-β-D-glucan levels in 149 serum samples were detected by the established method and G-test, respectively, and their detection efficiency was evaluated. Results: The (1,3)-β-D-glucans were extracted from Candida albicans successfully, and the water-soluble (1,3)-β-D-glucans were obtained after digesting with glucanase. After SDS-PAGE separation and glycogen staining, it was found that water-soluble (1,3)-β-D-glucans were mainly distributed in three regions with relative molecular weight less than 1 700, about 4 600 and 10 000-15 000. The proportion of (1,3)-β-D-glucans with relative molecular weight less than 10 000 was higher, so they were used as the target for screening aptamers. After 8 rounds of positive screening and 4 rounds of negative screening, the last round of ssDNA library was amplified into dsDNA and cloned into pUC19 plasmid. The relative binding capacity of the aptamers amplified from the single positive clone was compared, and 6 aptamers with high binding capacity, named A1-A6 respectively, were obtained. The results of competitive experiments showed that six aptamers could recognize four different sites. The affinity between aptamers with high binding capacity and different concentrations of (1,3)-β-D-glucans was determined, and the results showed that the detection limit with naked eyes was 3.125 pg/mL, and that the linear range was between 1.6 pg/mL and 400 pg/mL. The (1,3)-β-D-glucans detection results of 149 serum samples showed that the detection performance of the aptamer self-assembled color system was better than that of G test (χ2=4.373, P=0.036 5). Conclusion: The visual nucleic acid aptamer probe is constructed successfully to detect serum (1,3)-β-D-glucans, which is expected to develop a point-of-care testing kit for the detection of deep fungal infection.

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孟伟,王雯,章宏祥,周发友,唐晓磊.自组装核酸适配子探针在深部真菌感染可视化检测中的应用[J].临床检验杂志,2020,(1):1-6

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  • 收稿日期:2019-08-13
  • 最后修改日期:2020-02-03
  • 录用日期:2020-02-03
  • 在线发布日期: 2020-04-20
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