Detection of Klebsiella pneumonia in respiratory tract samples by the loop-mediated isothermal amplification method
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上海市科学技术委员会基础研究重大专项(17JC1401000、17441902400);上海市科学技术委员会“科技创新行动计划”(16441906500);国家科技重大专项(2017ZX10302401-004-005);浦东新区卫生和计划生育委员会重点学科建设(PWZxk2017-09)


Loop-mediated isothermal amplification method for detection of Klebsiella pneumonia in respiratory samples
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    摘要:

    摘要:目的:建立环介导等温扩增技术(loop-mediated isothermal amplification,LAMP)检测呼吸道感染患者痰液中肺炎克雷伯菌(Klebsiella pneumoniae,Kpn)的方法并进行初步应用。 方法:基于Kpn phoE基因设计4条特异性引物,对反应条件中的Mg2+和甜菜碱浓度进行优化,建立检测Kpn LAMP方法并进行特异性和灵敏度试验;收集308例呼吸道感染患者痰液样本,进行细菌培养法、LAMP法、DNA测序技术检测,评估LAMP检测体系。 结果:8 mmol/L、0.4 mmol/L确定为Mg2+和甜菜碱的最佳扩增浓度;该体系特异性强,与其他菌株无交叉反应,灵敏度为104 CFU/mL;临床样本中Kpn的LAMP检出率(53.89%)高于培养法(42.20%),差异有统计学意义(χ2=161.65,P<0.05);LAMP法与细菌培养法在Kpn阳性样本、无细菌生长样本、非Kpn其他细菌阳性样本中的一致率分别为96.15%、100%、65.25%,46例不一致样本经DNA测序验证,LAMP法与测序符合率为86.95%(40/46); LAMP法和DNA测序法对131例样本同时进行检测,经Kappa检验两者具有极好的一致性(Kappa系数=0.817)。 结论:与细菌培养法相比,LAMP法具有准确性高、灵敏度高、特异性强、反应省时等优势,可以作为肺炎克雷伯菌的快速检测方法。

    Abstract:

    Abstract: Objective: To establish a loop-mediated isothermal amplification (LAMP) method for the detection of Klebsiella pneumoniae (Kpn) in sputum of patients with respiratory infection. Methods: Four specific primers were designed based on phoE gene of Kpn, and the concentrations of Mg2+ and betaine in reaction conditions were optimized. After the LAMP assay for the detection of Kpn was established, its specificity and sensitivity were evaluated. A total of 308 sputum samples from the patients with respiratory infection were collected and detected by the bacterial culture method, LAMP assay and DNA sequencing technology, respectively, to evaluate the detection performance of the LAMP assay. Results: The optimal concentrations of Mg2+ and betaine were 8 mmol/L and 0.4 mmol/L, respectively. The established LAMP assay was highly specific and had no cross reaction with other strains, and its sensitivity was 104 CFU/mL. The detection rate of Kpn (53.89%) by the LAMP assay was significantly higher than that by the bacterial culture method (42.20%, χ2=161.65, P<0.05). The coincidence rates between the LAMP assay and the bacterial culture method were 96.15%, 100% and 65.25%, respectively, for Kpn positive samples, without bacterial infection samples and non-Kpn bacteria positive samples. Forty-six samples with inconsistent results were verified by DNA sequencing, and the coincidence rate of the LAMP assay and DNA sequencing was 86.95% (40/46). 131 samples were detected by the LAMP assay and DNA sequencing, respectively, and they had excellent consistency by Kappa test (Kappa coefficient=0.817). Conclusion: Compared with the bacterial culture method, the established LAMP assay has the advantages of high accuracy, high sensitivity, strong specificity, and time-saving reaction, which may be used as a rapid detection method for Klebsiella pneumoniae.

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司玉莹,赵望,叶蓓,成宇,张雯雁,叶杨芹,王玉超,王岚,范列英. Detection of Klebsiella pneumonia in respiratory tract samples by the loop-mediated isothermal amplification method[J].临床检验杂志,2020,(1):56-59

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  • 收稿日期:2019-10-05
  • 最后修改日期:2020-01-21
  • 录用日期:2020-01-14
  • 在线发布日期: 2020-07-24
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