基于单细胞测序探索乙型肝炎患者树突状细胞的功能变化
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国家自然科学基金青年项目(82002133)


Single-cell sequencing reveals functional changes of dendritic cells in hepatitis B patients
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    摘要:目的探讨乙型肝炎病毒(HBV)感染不同阶段患者树突状细胞(DC)功能变化,并分析其功能障碍机制。方法从GEO数据库下载单细胞RNA测序数据集GSE182159,根据感染阶段分为健康对照(HC)组、免疫活动(IA)组和免疫耐受(IT)组。选取IA和IT患者各7例以及同期12例体检健康者采集外周血,使用流式细胞术筛选经典树突状细胞(cDC)和浆细胞样树突状细胞(pDC),实时荧光定量PCR(qRT-PCR)检测cDC和pDC转录因子表达水平。使用R语言和Python语言进行生物信息学分析。结果IA组和IT组的DC占比高于HC组。功能富集分析显示,IA组cDC的差异基因主要富集于炎症反应、MHCI抗原加工与提呈、细胞迁移、信号传递、代谢及免疫反应,IT组富集强度较低且干扰素反应显著下降。IA组pDC差异基因富集于MHCI抗原提呈、Fc受体信号转导和代谢,而IT组仅富集于Fc受体信号转导及代谢,且强度更低。两组pDC对I、I型干扰素的合成均下调,IT组下调更为显著。细胞通信分析显示,IA组髓系细胞除pDC外,与T细胞的通信增强;IT组cDC和pDC与T细胞的通信则下降。转录因子分析发现,STAT2、STAT3、IRF1、IRF5在IA组高表达,而在IT组表达较低;BHL-HE40在IT组cDC和pDC中普遍高表达。qRT-PCR结果与单细胞转录因子分析结果一致。结论乙型肝炎IT期是cDC功能障碍的关键时期,其MHCI抗原提呈、代谢及干扰素反应被显著抑制。pDC功能抑制较cDC更早发生,在IA期即表现出干扰素合成能力显著下调。

    Abstract:

    Abstract: ObjectiveTo investigate the functional changes of dendritic cells(DCs) in patients at different stages of hepatitis B virus (HBV) infection and analyze the mechanisms underlying DC dysfunction. Methods Single-cell RNA sequencing dataset GSE182159 was downloaded from the GEO database and classified into healthy control (HC),immune active (IA),and immune tolerant (IT)groups based on infection stage. Peripheral blood samples were collected from 7 IA patients,7 IT patients,and 12 healthy controls.Flow cytometry was used to isolate classical dendritic cells(cDC)and plasmacytoid dendritic cells(pDC). The expression levels of transcription factors in cDC and pDCwere measured by quantitative real-time PCR (qRT-PCR). Bioinformatics analyses were performed using R and Python package. ResultsThe proportions of DCs in IA and IT groups were higher than that in HC group. Functional enrichment analysis revealed that the dfferentially expressed genes (DEGs) of cDCs in the IA group were primarily enriched for the processes,such as inflammatory response,MHCclass II antigenprocessing andpresentation,cell migration,signal transduction,metabolism, and immune response. In contrast the IT group exhibited lower enrichment intensity and a significant reduction in interferon responses. The DEGs of pDC in the IA group were enriched in the processes of MHC-II antigen presentation,Fc receptor signal transduction, and metabolism,whereas those in the IT group were showed enrichment only in Fc receptor signal transduction and metabolismwithalower intensity.Bothgroupsexhbitedreducedsynthesisof typesIandIinteferonsinpDCwiththeITgroupshowing a more pronounced downregulation. Cell-cell communication analysis demonstrated enhanced interactions between myeloid cells(except pDC) and T cells in the IA group, whereas the interactions between cDC/pDC and T cells in the IT group were reduced. Transcription factor analysis revealed that STAT2,STAT3, IRFl, and IRF5 were highly expressed in the IAgroup but their expression exhibited lower expression levels in the IT group. In contrast, BHLHE4O was broadly upregulated in both cDC and pDC subsets within the IT group.The qRT-PCR results were consistent with the findings from the single-cell transcription factor analysis. ConclusionThe IT phase of hepatitis B infectionrepresents acritical period for cDCdysfunction,characterized bysignificantsuppression of MHcI antigen presentation,metabolism,and interferon responsiveness. The functional impairment of pDC precedes that of cDC,as evidenced by a marked downregulation of interferon synthesiscapacityobserved during the IAphase.

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陈世星,尹盛夏,张婉莹,马骏涛,陈慧,朱益佳,冉金秋,陈雨欣,吴超.基于单细胞测序探索乙型肝炎患者树突状细胞的功能变化[J].临床检验杂志,2025,43(09):680-688

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  • 收稿日期:2025-07-21
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  • 在线发布日期: 2025-10-24
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